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词汇 Ramachandran plot
分类 英语词汇 英语翻译词典
释义

Ramachandran plot

中文百科

拉氏图

拉氏图,示立体上允许及不允许的构象之 φ 和 ψ 值。
主链的二面角 φ 和 ψ (以及 ω)
 通过一种含有 β-折叠 和 α-螺旋的一种三聚体DNA夹蛋白质,人PCNA,绘制的拉氏图(PDB 号 1AXC). 红色,棕色和黄色区域分别代表偏好的,允许的和“通常允许”的区域,如ProCheck定义

拉氏图(又名 Ramachandran 图[φ,ψ]图α-碳与酰胺平面交角图,英名 Ramachandran plot, Ramachandran diagram, 或 [φ,ψ] plot),起初是于1963年被 G. N. Ramachandran,C. Ramakrishnan 和 V. Sasisekharan 提出的,是一种使蛋白质结构中,主链氨基酸残基的二面角 ψ 和 φ 可视化的方法。

左侧的图形说明了主链二面角φ 和 ψ 的定义(当时被Ramachandran叫做 φ 和 φ')。肽键处的 ω 角通常是 180°,因为肽键部分双键的性质使它保持平面结构。右上方的图,则展示了由 Ramachandran 等人于 1963年 至 1968年根据刚性球面模型计算出来的主链 φ,ψ 角允许的构象区域:完全允许的以实线表示,部分允许的则是虚线,点线则表示松弛的τ(N-Cα-C)角。由于二面角的值 0° 和 360° 是等效的,拉氏图的边缘可以从左到右和从上到下“卷”起来。比如说,左下角的允许区的小条就可以与左上方的大的构象允许区域连接起来。

英语百科

Ramachandran plot 拉氏图

Original hard-sphere, reduced-radius, and relaxed-tau φ,ψ regions from Ramachandran, with updated labels and axes
Backbone dihedral angles φ and ψ (and ω)
 A Ramachandran plot generated from human PCNA, a trimeric DNA clamp protein that contains both β-sheet and α-helix (PDB ID 1AXC). The red, brown, and yellow regions represent the favored, allowed, and

A Ramachandran plot (also known as a Ramachandran diagram or a [φ,ψ] plot), originally developed in 1963 by G. N. Ramachandran, C. Ramakrishnan, and V. Sasisekharan, is a way to visualize energetically allowed regions for backbone dihedral angles ψ against φ of amino acid residues in protein structure. The figure at left illustrates the definition of the φ and ψ backbone dihedral angles (called φ and φ' by Ramachandran). The ω angle at the peptide bond is normally 180°, since the partial-double-bond character keeps the peptide planar. The figure at top right shows the allowed φ,ψ backbone conformational regions from the Ramachandran et al. 1963 and 1968 hard-sphere calculations: full radius in solid outline, reduced radius in dashed, and relaxed tau (N-Cα-C) angle in dotted lines. Because dihedral angle values are circular and 0° is the same as 360°, the edges of the Ramachandran plot "wrap" right-to-left and bottom-to-top. For instance, the small strip of allowed values along the lower-left edge of the plot are a continuation of the large, extended-chain region at upper left.

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